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Reference docs for subseq.bio programs and API.
Uploads mount at /inputs; write results to /outputs for download.
Core
Program Guides
RF DiffusionBackbone generation with contigs or symmetry.
RFdiffusion3 (Foundry)All-atom RFdiffusion3 via Foundry.
AlphaFold 2Structure prediction presets.
ESMfoldSequence-to-structure folding.
LigandMPNNSequence design conditioned on ligands.
Boltz-2Boltz v2 structure prediction.
BoltzGenBinder design diffusion pipeline.
MMseqs2MSA and search templates.
DiffDock-LLigand docking from SMILES/SDF.
DiffDock-PPProtein–protein docking baseline.
GROMACSMD examples with GPU flags.
PyMOL+Batch renders and animations.
OpenMMPython minimization starter.
FreeBindCraftDe novo binder search settings.
UtilityRun custom scripts in a slim image.